LogisticRegression

class ibex.sklearn.linear_model.LogisticRegression(penalty='l2', dual=False, tol=0.0001, C=1.0, fit_intercept=True, intercept_scaling=1, class_weight=None, random_state=None, solver='liblinear', max_iter=100, multi_class='ovr', verbose=0, warm_start=False, n_jobs=1)

Bases: sklearn.linear_model.logistic.LogisticRegression, ibex._base.FrameMixin

Note

The documentation following is of the class wrapped by this class. There are some changes, in particular:

Note

The documentation following is of the original class wrapped by this class. This class wraps the attribute coef_.

Example:

>>> import numpy as np
>>> from sklearn import datasets
>>> import pandas as pd
>>>
>>> iris = datasets.load_iris()
>>> features, targets, iris = iris['feature_names'], iris['target_names'], pd.DataFrame(
...     np.c_[iris['data'], iris['target']],
...     columns=iris['feature_names']+['class'])
>>> iris['class'] = iris['class'].map(pd.Series(targets))
>>>
>>> iris.head()
                sepal length (cm)  sepal width (cm)  petal length (cm)  petal width (cm)             0                5.1               3.5                1.4               0.2
1                4.9               3.0                1.4               0.2
2                4.7               3.2                1.3               0.2
3                4.6               3.1                1.5               0.2
4                5.0               3.6                1.4               0.2

    class
0  setosa
1  setosa
2  setosa
3  setosa
4  setosa

>>>
>>> from ibex.sklearn import linear_model as pd_linear_model
>>>
>>> clf =  pd_linear_model.LogisticRegression().fit(iris[features], iris['class'])
>>>
>>> clf.coef_
sepal length (cm)   ...
sepal width (cm)    ...
petal length (cm)   ...
petal width (cm)    ...
dtype: float64

Note

The documentation following is of the original class wrapped by this class. This class wraps the attribute intercept_.

Example:

>>> import numpy as np
>>> from sklearn import datasets
>>> import pandas as pd
>>>
>>> iris = datasets.load_iris()
>>> features, targets, iris = iris['feature_names'], iris['target_names'], pd.DataFrame(
...     np.c_[iris['data'], iris['target']],
...     columns=iris['feature_names']+['class'])
>>> iris['class'] = iris['class'].map(pd.Series(targets))
>>>
>>> iris.head()
                sepal length (cm)  sepal width (cm)  petal length (cm)  petal width (cm)             0                5.1               3.5                1.4               0.2
1                4.9               3.0                1.4               0.2
2                4.7               3.2                1.3               0.2
3                4.6               3.1                1.5               0.2
4                5.0               3.6                1.4               0.2

    class
0  setosa
1  setosa
2  setosa
3  setosa
4  setosa

>>> from ibex.sklearn import linear_model as pd_linear_model
>>>
>>> clf = pd_linear_model.LogisticRegression().fit(iris[features], iris['class'])
>>>
>>> clf.intercept_
sepal length (cm)   ...
sepal width (cm)    ...
petal length (cm)   ...
petal width (cm)    ...
dtype: float64

Logistic Regression (aka logit, MaxEnt) classifier.

In the multiclass case, the training algorithm uses the one-vs-rest (OvR) scheme if the ‘multi_class’ option is set to ‘ovr’, and uses the cross- entropy loss if the ‘multi_class’ option is set to ‘multinomial’. (Currently the ‘multinomial’ option is supported only by the ‘lbfgs’, ‘sag’ and ‘newton-cg’ solvers.)

This class implements regularized logistic regression using the ‘liblinear’ library, ‘newton-cg’, ‘sag’ and ‘lbfgs’ solvers. It can handle both dense and sparse input. Use C-ordered arrays or CSR matrices containing 64-bit floats for optimal performance; any other input format will be converted (and copied).

The ‘newton-cg’, ‘sag’, and ‘lbfgs’ solvers support only L2 regularization with primal formulation. The ‘liblinear’ solver supports both L1 and L2 regularization, with a dual formulation only for the L2 penalty.

Read more in the User Guide.

penalty : str, ‘l1’ or ‘l2’, default: ‘l2’

Used to specify the norm used in the penalization. The ‘newton-cg’, ‘sag’ and ‘lbfgs’ solvers support only l2 penalties.

New in version 0.19: l1 penalty with SAGA solver (allowing ‘multinomial’ + L1)

dual : bool, default: False
Dual or primal formulation. Dual formulation is only implemented for l2 penalty with liblinear solver. Prefer dual=False when n_samples > n_features.
tol : float, default: 1e-4
Tolerance for stopping criteria.
C : float, default: 1.0
Inverse of regularization strength; must be a positive float. Like in support vector machines, smaller values specify stronger regularization.
fit_intercept : bool, default: True
Specifies if a constant (a.k.a. bias or intercept) should be added to the decision function.
intercept_scaling : float, default 1.

Useful only when the solver ‘liblinear’ is used and self.fit_intercept is set to True. In this case, x becomes [x, self.intercept_scaling], i.e. a “synthetic” feature with constant value equal to intercept_scaling is appended to the instance vector. The intercept becomes intercept_scaling * synthetic_feature_weight.

Note! the synthetic feature weight is subject to l1/l2 regularization as all other features. To lessen the effect of regularization on synthetic feature weight (and therefore on the intercept) intercept_scaling has to be increased.

class_weight : dict or ‘balanced’, default: None

Weights associated with classes in the form {class_label: weight}. If not given, all classes are supposed to have weight one.

The “balanced” mode uses the values of y to automatically adjust weights inversely proportional to class frequencies in the input data as n_samples / (n_classes * np.bincount(y)).

Note that these weights will be multiplied with sample_weight (passed through the fit method) if sample_weight is specified.

New in version 0.17: class_weight=’balanced’

random_state : int, RandomState instance or None, optional, default: None
The seed of the pseudo random number generator to use when shuffling the data. If int, random_state is the seed used by the random number generator; If RandomState instance, random_state is the random number generator; If None, the random number generator is the RandomState instance used by np.random. Used when solver == ‘sag’ or ‘liblinear’.
solver : {‘newton-cg’, ‘lbfgs’, ‘liblinear’, ‘sag’, ‘saga’},

default: ‘liblinear’ Algorithm to use in the optimization problem.

  • For small datasets, ‘liblinear’ is a good choice, whereas ‘sag’ and
    ‘saga’ are faster for large ones.
  • For multiclass problems, only ‘newton-cg’, ‘sag’, ‘saga’ and ‘lbfgs’
    handle multinomial loss; ‘liblinear’ is limited to one-versus-rest schemes.
  • ‘newton-cg’, ‘lbfgs’ and ‘sag’ only handle L2 penalty, whereas
    ‘liblinear’ and ‘saga’ handle L1 penalty.

Note that ‘sag’ and ‘saga’ fast convergence is only guaranteed on features with approximately the same scale. You can preprocess the data with a scaler from sklearn.preprocessing.

New in version 0.17: Stochastic Average Gradient descent solver.

New in version 0.19: SAGA solver.

max_iter : int, default: 100
Useful only for the newton-cg, sag and lbfgs solvers. Maximum number of iterations taken for the solvers to converge.
multi_class : str, {‘ovr’, ‘multinomial’}, default: ‘ovr’

Multiclass option can be either ‘ovr’ or ‘multinomial’. If the option chosen is ‘ovr’, then a binary problem is fit for each label. Else the loss minimised is the multinomial loss fit across the entire probability distribution. Does not work for liblinear solver.

New in version 0.18: Stochastic Average Gradient descent solver for ‘multinomial’ case.

verbose : int, default: 0
For the liblinear and lbfgs solvers set verbose to any positive number for verbosity.
warm_start : bool, default: False

When set to True, reuse the solution of the previous call to fit as initialization, otherwise, just erase the previous solution. Useless for liblinear solver.

New in version 0.17: warm_start to support lbfgs, newton-cg, sag, saga solvers.

n_jobs : int, default: 1
Number of CPU cores used when parallelizing over classes if multi_class=’ovr’”. This parameter is ignored when the ``solver``is set to ‘liblinear’ regardless of whether ‘multi_class’ is specified or not. If given a value of -1, all cores are used.
coef_ : array, shape (1, n_features) or (n_classes, n_features)

Coefficient of the features in the decision function.

coef_ is of shape (1, n_features) when the given problem is binary.

intercept_ : array, shape (1,) or (n_classes,)

Intercept (a.k.a. bias) added to the decision function.

If fit_intercept is set to False, the intercept is set to zero. intercept_ is of shape(1,) when the problem is binary.

n_iter_ : array, shape (n_classes,) or (1, )
Actual number of iterations for all classes. If binary or multinomial, it returns only 1 element. For liblinear solver, only the maximum number of iteration across all classes is given.
SGDClassifier : incrementally trained logistic regression (when given
the parameter loss="log").

sklearn.svm.LinearSVC : learns SVM models using the same algorithm.

The underlying C implementation uses a random number generator to select features when fitting the model. It is thus not uncommon, to have slightly different results for the same input data. If that happens, try with a smaller tol parameter.

Predict output may not match that of standalone liblinear in certain cases. See differences from liblinear in the narrative documentation.

LIBLINEAR – A Library for Large Linear Classification
http://www.csie.ntu.edu.tw/~cjlin/liblinear/
SAG – Mark Schmidt, Nicolas Le Roux, and Francis Bach
Minimizing Finite Sums with the Stochastic Average Gradient https://hal.inria.fr/hal-00860051/document
SAGA – Defazio, A., Bach F. & Lacoste-Julien S. (2014).
SAGA: A Fast Incremental Gradient Method With Support for Non-Strongly Convex Composite Objectives https://arxiv.org/abs/1407.0202
Hsiang-Fu Yu, Fang-Lan Huang, Chih-Jen Lin (2011). Dual coordinate descent
methods for logistic regression and maximum entropy models. Machine Learning 85(1-2):41-75. http://www.csie.ntu.edu.tw/~cjlin/papers/maxent_dual.pdf
decision_function(X)

Note

The documentation following is of the class wrapped by this class. There are some changes, in particular:

Predict confidence scores for samples.

The confidence score for a sample is the signed distance of that sample to the hyperplane.

X : {array-like, sparse matrix}, shape = (n_samples, n_features)
Samples.
array, shape=(n_samples,) if n_classes == 2 else (n_samples, n_classes)
Confidence scores per (sample, class) combination. In the binary case, confidence score for self.classes_[1] where >0 means this class would be predicted.
fit(X, y, sample_weight=None)[source]

Note

The documentation following is of the class wrapped by this class. There are some changes, in particular:

Fit the model according to the given training data.

X : {array-like, sparse matrix}, shape (n_samples, n_features)
Training vector, where n_samples is the number of samples and n_features is the number of features.
y : array-like, shape (n_samples,)
Target vector relative to X.
sample_weight : array-like, shape (n_samples,) optional

Array of weights that are assigned to individual samples. If not provided, then each sample is given unit weight.

New in version 0.17: sample_weight support to LogisticRegression.

self : object
Returns self.
predict(X)

Note

The documentation following is of the class wrapped by this class. There are some changes, in particular:

Predict class labels for samples in X.

X : {array-like, sparse matrix}, shape = [n_samples, n_features]
Samples.
C : array, shape = [n_samples]
Predicted class label per sample.
predict_log_proba(X)[source]

Note

The documentation following is of the class wrapped by this class. There are some changes, in particular:

Log of probability estimates.

The returned estimates for all classes are ordered by the label of classes.

X : array-like, shape = [n_samples, n_features]

T : array-like, shape = [n_samples, n_classes]
Returns the log-probability of the sample for each class in the model, where classes are ordered as they are in self.classes_.
predict_proba(X)[source]

Note

The documentation following is of the class wrapped by this class. There are some changes, in particular:

Probability estimates.

The returned estimates for all classes are ordered by the label of classes.

For a multi_class problem, if multi_class is set to be “multinomial” the softmax function is used to find the predicted probability of each class. Else use a one-vs-rest approach, i.e calculate the probability of each class assuming it to be positive using the logistic function. and normalize these values across all the classes.

X : array-like, shape = [n_samples, n_features]

T : array-like, shape = [n_samples, n_classes]
Returns the probability of the sample for each class in the model, where classes are ordered as they are in self.classes_.
score(X, y, sample_weight=None)

Note

The documentation following is of the class wrapped by this class. There are some changes, in particular:

Returns the mean accuracy on the given test data and labels.

In multi-label classification, this is the subset accuracy which is a harsh metric since you require for each sample that each label set be correctly predicted.

X : array-like, shape = (n_samples, n_features)
Test samples.
y : array-like, shape = (n_samples) or (n_samples, n_outputs)
True labels for X.
sample_weight : array-like, shape = [n_samples], optional
Sample weights.
score : float
Mean accuracy of self.predict(X) wrt. y.