RandomTreesEmbedding

class ibex.sklearn.ensemble.RandomTreesEmbedding(n_estimators=10, max_depth=5, min_samples_split=2, min_samples_leaf=1, min_weight_fraction_leaf=0.0, max_leaf_nodes=None, min_impurity_decrease=0.0, min_impurity_split=None, sparse_output=True, n_jobs=1, random_state=None, verbose=0, warm_start=False)

Bases: sklearn.ensemble.forest.RandomTreesEmbedding, ibex._base.FrameMixin

Note

The documentation following is of the class wrapped by this class. There are some changes, in particular:

Note

The documentation following is of the original class wrapped by this class. This class wraps the attribute feature_importances_.

Example:

>>> import pandas as pd
>>> import numpy as np
>>> from ibex.sklearn import datasets
>>> from ibex.sklearn.ensemble import RandomForestClassifier as PdRandomForestClassifier

>>> iris = datasets.load_iris()
>>> features = iris['feature_names']
>>> iris = pd.DataFrame(
...     np.c_[iris['data'], iris['target']],
...     columns=features+['class'])

>>> iris[features]
sepal length (cm)  sepal width (cm)  petal length (cm)  petal width (cm)
0                5.1               3.5                1.4               0.2
1                4.9               3.0                1.4               0.2
2                4.7               3.2                1.3               0.2
3                4.6               3.1                1.5               0.2
4                5.0               3.6                1.4               0.2
...

>>> clf =  PdRandomForestClassifier(random_state=42).fit(iris[features], iris['class'])
>>>
>>> clf.feature_importances_
sepal length (cm)    0.129268
sepal width (cm)     0.015822
petal length (cm)    0.444740
petal width (cm)     0.410169
dtype: float64

An ensemble of totally random trees.

An unsupervised transformation of a dataset to a high-dimensional sparse representation. A datapoint is coded according to which leaf of each tree it is sorted into. Using a one-hot encoding of the leaves, this leads to a binary coding with as many ones as there are trees in the forest.

The dimensionality of the resulting representation is n_out <= n_estimators * max_leaf_nodes. If max_leaf_nodes == None, the number of leaf nodes is at most n_estimators * 2 ** max_depth.

Read more in the User Guide.

n_estimators : integer, optional (default=10)
Number of trees in the forest.
max_depth : integer, optional (default=5)
The maximum depth of each tree. If None, then nodes are expanded until all leaves are pure or until all leaves contain less than min_samples_split samples.
min_samples_split : int, float, optional (default=2)

The minimum number of samples required to split an internal node:

  • If int, then consider min_samples_split as the minimum number.
  • If float, then min_samples_split is a percentage and ceil(min_samples_split * n_samples) is the minimum number of samples for each split.

Changed in version 0.18: Added float values for percentages.

min_samples_leaf : int, float, optional (default=1)

The minimum number of samples required to be at a leaf node:

  • If int, then consider min_samples_leaf as the minimum number.
  • If float, then min_samples_leaf is a percentage and ceil(min_samples_leaf * n_samples) is the minimum number of samples for each node.

Changed in version 0.18: Added float values for percentages.

min_weight_fraction_leaf : float, optional (default=0.)
The minimum weighted fraction of the sum total of weights (of all the input samples) required to be at a leaf node. Samples have equal weight when sample_weight is not provided.
max_leaf_nodes : int or None, optional (default=None)
Grow trees with max_leaf_nodes in best-first fashion. Best nodes are defined as relative reduction in impurity. If None then unlimited number of leaf nodes.
min_impurity_split : float,

Threshold for early stopping in tree growth. A node will split if its impurity is above the threshold, otherwise it is a leaf.

Deprecated since version 0.19: min_impurity_split has been deprecated in favor of min_impurity_decrease in 0.19 and will be removed in 0.21. Use min_impurity_decrease instead.

min_impurity_decrease : float, optional (default=0.)

A node will be split if this split induces a decrease of the impurity greater than or equal to this value.

The weighted impurity decrease equation is the following:

N_t / N * (impurity - N_t_R / N_t * right_impurity
                    - N_t_L / N_t * left_impurity)

where N is the total number of samples, N_t is the number of samples at the current node, N_t_L is the number of samples in the left child, and N_t_R is the number of samples in the right child.

N, N_t, N_t_R and N_t_L all refer to the weighted sum, if sample_weight is passed.

New in version 0.19.

bootstrap : boolean, optional (default=True)
Whether bootstrap samples are used when building trees.
sparse_output : bool, optional (default=True)
Whether or not to return a sparse CSR matrix, as default behavior, or to return a dense array compatible with dense pipeline operators.
n_jobs : integer, optional (default=1)
The number of jobs to run in parallel for both fit and predict. If -1, then the number of jobs is set to the number of cores.
random_state : int, RandomState instance or None, optional (default=None)
If int, random_state is the seed used by the random number generator; If RandomState instance, random_state is the random number generator; If None, the random number generator is the RandomState instance used by np.random.
verbose : int, optional (default=0)
Controls the verbosity of the tree building process.
warm_start : bool, optional (default=False)
When set to True, reuse the solution of the previous call to fit and add more estimators to the ensemble, otherwise, just fit a whole new forest.
estimators_ : list of DecisionTreeClassifier
The collection of fitted sub-estimators.
[1]P. Geurts, D. Ernst., and L. Wehenkel, “Extremely randomized trees”, Machine Learning, 63(1), 3-42, 2006.
[2]Moosmann, F. and Triggs, B. and Jurie, F. “Fast discriminative visual codebooks using randomized clustering forests” NIPS 2007
apply(X)

Note

The documentation following is of the class wrapped by this class. There are some changes, in particular:

Apply trees in the forest to X, return leaf indices.

X : array-like or sparse matrix, shape = [n_samples, n_features]
The input samples. Internally, its dtype will be converted to dtype=np.float32. If a sparse matrix is provided, it will be converted into a sparse csr_matrix.
X_leaves : array_like, shape = [n_samples, n_estimators]
For each datapoint x in X and for each tree in the forest, return the index of the leaf x ends up in.
fit(X, y=None, sample_weight=None)[source]

Note

The documentation following is of the class wrapped by this class. There are some changes, in particular:

Fit estimator.

X : array-like or sparse matrix, shape=(n_samples, n_features)
The input samples. Use dtype=np.float32 for maximum efficiency. Sparse matrices are also supported, use sparse csc_matrix for maximum efficiency.
sample_weight : array-like, shape = [n_samples] or None
Sample weights. If None, then samples are equally weighted. Splits that would create child nodes with net zero or negative weight are ignored while searching for a split in each node. In the case of classification, splits are also ignored if they would result in any single class carrying a negative weight in either child node.
self : object
Returns self.
fit_transform(X, y=None, sample_weight=None)[source]

Note

The documentation following is of the class wrapped by this class. There are some changes, in particular:

Fit estimator and transform dataset.

X : array-like or sparse matrix, shape=(n_samples, n_features)
Input data used to build forests. Use dtype=np.float32 for maximum efficiency.
sample_weight : array-like, shape = [n_samples] or None
Sample weights. If None, then samples are equally weighted. Splits that would create child nodes with net zero or negative weight are ignored while searching for a split in each node. In the case of classification, splits are also ignored if they would result in any single class carrying a negative weight in either child node.
X_transformed : sparse matrix, shape=(n_samples, n_out)
Transformed dataset.
transform(X)[source]

Note

The documentation following is of the class wrapped by this class. There are some changes, in particular:

Transform dataset.

X : array-like or sparse matrix, shape=(n_samples, n_features)
Input data to be transformed. Use dtype=np.float32 for maximum efficiency. Sparse matrices are also supported, use sparse csr_matrix for maximum efficiency.
X_transformed : sparse matrix, shape=(n_samples, n_out)
Transformed dataset.